QuantumATK Forum

QuantumATK => General Questions and Answers => Topic started by: Trung Phuc on October 12, 2017, 17:36

Title: Penta-graphene nanoribbon
Post by: Trung Phuc on October 12, 2017, 17:36
Hello administrators!
I am a new user of quantumwise. After reviewing your previous posts about how to create penta-graphene. I tried to make penta-graphene ribbon like this paper (attached below). Personally, I think my outcome (attached below) looks not bad. However, I had 2 problems:
+ Could not passivate one carbon atom with one hydrogen atom.
+ Could not repeat this unit cell to obtain a penta-graphene ribbon.
Thank you so much for your attention!
Title: Re: Penta-graphene nanoribbon
Post by: Jess Wellendorff on October 13, 2017, 11:34
Dear Trung Punc,
please attach also the ATK Python script with the structure you have built. Makes it easier to help you...
- Jess
Title: Re: Penta-graphene nanoribbon
Post by: Trung Phuc on October 13, 2017, 18:08
Hi Jess!
Thank you for your suggestion. Here is my structure. I tried to color it to make it easier to see but the color disappeared after saving.
I  look forward to see your advice.
Title: Re: Penta-graphene nanoribbon
Post by: Jess Wellendorff on October 18, 2017, 10:52
1) You should use the recipe on https://quantumwise.com/forum/index.php?topic=5329.msg23011#msg23011 (https://quantumwise.com/forum/index.php?topic=5329.msg23011#msg23011) to first create penta-graphene, then remove the appropriate C atoms  to create ribbon without repeating the cell.
2) Use the Coordinate Tools --> Custom Passivator with SP2 hybridization to passivate with only 1 H atom.
Title: Re: Penta-graphene nanoribbon
Post by: Jess Wellendorff on October 18, 2017, 11:26
You should probably also swap a few axes to align the ribbon along C.
Title: Re: Penta-graphene nanoribbon
Post by: Trung Phuc on October 18, 2017, 16:50
Thank you so much, Jess!
Your advice is very helpful to me. In addition, your other answers in this forum are so great. Keep doing your job well. I will practice more and more.
You spent a lot of time helping me. Hope you be healthy and happy.
All the bests,
Phuc
Title: Re: Penta-graphene nanoribbon
Post by: Jess Wellendorff on October 25, 2017, 14:47
Thanks very much!