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Messages - Habib

Pages: [1] 2
1
General Questions and Answers / Re: Band Structure
« on: November 11, 2024, 15:28 »
Hi Jahanzaib,

Yes, you can change the colour by clicking on the plot editor. From there, select the bands you’re interested in and choose your preferred colour and line width. Please see the attached screenshot for reference.

I’m using QuantumATK 2019.12, but I’m confident there’s a similar option in the new version as well.
cannot help with the python code, but I use the GUI for combining BS and DOS etc.

Kind Regards
Habib

2
Plugin Development / Re: Add-on Controller Not Working
« on: October 26, 2024, 10:16 »
I saw this post and tried, but it didn’t work. Strangely, this add-on is already installed (see the screenshot), but I cannot update it, and it doesn’t appear in the builder. Are there any alternative solutions?

3
Plugin Development / Add-on Controller Not Working
« on: October 25, 2024, 13:42 »
Hi there,

I am using QuantumATK Version Q-2019.12 and was trying to update the add-ons, but I got the following error. I also tried to install just the Tube Wrapper, but received the same error. I checked the forum for similar issues but didn't find a relevant answer.

Here is the error message:

Unable to obtain a list of available add-ons.
Something went wrong in accessing the list of available packages on the repository server. Please check your network connectivity or try again later.

Kind Regards
Habib

4
Hi Anders,
Many thanks for the detailed response. I agree with you that it has the potential to be a good article. I will try that approach and get back to you if I encounter any serious issues.

5
Hi there,

I'm currently working on simulating the Elastic Constants of TiN, as attached, at various temperatures ranging from 0 K to 1500 K. DFT simulations allow us to calculate these constants only at 0 K. There are several approximations available to estimate the Elastic Constants at elevated temperatures https://doi.org/10.1016/j.tsf.2021.138872. I am using QuantumATK Q-2019.12. Could you please provide guidance, scripts, or options within QuantumATK that could assist me in simulating the Elastic Constants of crystal materials at different temperatures?

Elastic constants of TiN unit cell at 0K
+------------------------------------------------------------------------------+
| Elastic Constants in GPa                                                     |
+------------------------------------------------------------------------------+
|   523.42     136.72     136.72       0.00       0.00       0.00              |
|              523.42     136.72       0.00       0.00       0.00              |
|                         523.42       0.00       0.00       0.00              |
|                                    138.84       0.00       0.00              |
|                                               138.84       0.00              |
|                                                          138.84              |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Material properties calculated from the elastic constants:                   |
+------------------------------------------------------------------------------+
| Moduli in units of GPa:                                                      |
+------------------------------------------------------------------------------+
|                 Reuss     Voigt     Hill                                     |
+------------------------------------------------------------------------------+
| Bulk modulus:   265.6166  265.6166  265.6166                                 |
| Shear modulus:  156.4882  160.6448  158.5665                                 |
+------------------------------------------------------------------------------+
|                     X         Y         Z                                    |
| Young's modulus:   466.7859  466.7859  466.7859                              |
+------------------------------------------------------------------------------+
|                     XY        XZ         YZ                                  |
| Poisson ratios:      0.2071    0.2071    0.2071                              |
|                     YX        ZX         ZY                                  |
|                      0.2071    0.2071    0.2071                              |
+------------------------------------------------------------------------------+




6
Hi Anders,

Thanks for your reply.
I have been attempting to simulate the five 3d orbitals of Fe in LaFeO3—namely, dxy, dxz, dyz, dx2-dy2, and dz2—through spin-polarized DFT+U simulations. I utilized PDOS with the "projections=ProjectOnOrbitalsByElement" setting, and it worked well, producing the DOS of the mentioned orbitals in one spin (refer to the attached file). However, I require both spin-up and spin-down positions. Can you help me to simulate the DOS in both spin?

8
Dear Admin and Colleagues,

I have been attempting to simulate the five 3d orbitals of Fe in LaFeO3—namely, dxy, dxz, dyz, dx2-dy2, and dz2—through spin-polarized DFT+U simulations. I utilized PDOS with the "projections=ProjectOnOrbitalsByElement" setting, and it worked well, producing the DOS of the mentioned orbitals in one spin (refer to the attached file). However, I require both spin-up and spin-down positions. Can you help me to simulate the DOS in both spin?

Additionally, I tried manually adding sub-orbitals for the Fe 3d orbitals in the script (as shown below), but encountered an error as the software does not recognize the azimuthal quantum number.

# Basis Set
#----------------------------------------
iron_3d_dxy = ConfinedOrbital(
    principal_quantum_number=3,
    angular_momentum=2,
    azimuthal_quantum_number=0,
    radial_cutoff_radius=7.117*Bohr,
    confinement_start_radius=5.117*Bohr,
    additional_charge=0,
    confinement_strength=12.5*Hartree,
    confinement_power=2,
    radial_step_size=0.001*Bohr,
)

iron_3d_dxz = ConfinedOrbital(
    principal_quantum_number=3,
    angular_momentum=2,
    azimuthal_quantum_number=1,
    radial_cutoff_radius=7.117*Bohr,
    confinement_start_radius=5.117*Bohr,
    additional_charge=0,
    confinement_strength=12.5*Hartree,
    confinement_power=2,
    radial_step_size=0.001*Bohr,
)

iron_3d_dyz = ConfinedOrbital(
    principal_quantum_number=3,
    angular_momentum=2,
    azimuthal_quantum_number=2,
    radial_cutoff_radius=7.117*Bohr,
    confinement_start_radius=5.117*Bohr,
    additional_charge=0,
    confinement_strength=12.5*Hartree,
    confinement_power=2,
    radial_step_size=0.001*Bohr,
)

iron_3d_dx2_y2 = ConfinedOrbital(
    principal_quantum_number=3,
    angular_momentum=2,
    azimuthal_quantum_number=3,
    radial_cutoff_radius=7.117*Bohr,
    confinement_start_radius=5.117*Bohr,
    additional_charge=0,
    confinement_strength=12.5*Hartree,
    confinement_power=2,
    radial_step_size=0.001*Bohr,
)

iron_3d_dz2 = ConfinedOrbital(
    principal_quantum_number=3,
    angular_momentum=2,
    azimuthal_quantum_number=4,
    radial_cutoff_radius=7.117*Bohr,
    confinement_start_radius=5.117*Bohr,
    additional_charge=0,
    confinement_strength=12.5*Hartree,
    confinement_power=2,
    radial_step_size=0.001*Bohr,
)

iron_4f = ConfinedOrbital(
    principal_quantum_number=4,
    angular_momentum=3,
    radial_cutoff_radius=3.337*Bohr,
    confinement_start_radius=1.337*Bohr,
    additional_charge=0.013,
    confinement_strength=12.5*Hartree,
    confinement_power=2,
    radial_step_size=0.001*Bohr,
)

IronBasis = BasisSet(
    element=PeriodicTable.Iron,
    orbitals=[iron_3s, iron_3p, iron_3d_dxy, iron_3d_dxz, iron_3d_dyz, iron_3d_dx2_y2, iron_3d_dz2, iron_4p, iron_4s_0, iron_4f],
    occupations=[2.0, 6.0, 6.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
    hubbard_u=[0.0, 0.0, 5.5, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0]*eV,
    dft_half_parameters=Automatic,
    filling_method=SphericalSymmetric,
    onsite_spin_orbit_split=[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0]*eV,
    pseudopotential=NormConservingPseudoPotential("normconserving/26FE.16.GGAPBE.zip"),

9
General Questions and Answers / Re: DOS of five d orbitals
« on: December 18, 2023, 12:27 »
Thanks, Jahanzaib. I will try this, and it looks like it will work. At the moment, I solved this issue with VASP, as I needed the COHP and pCOHP, so I used the same file.

10
General Questions and Answers / Re: Simulation of COHP and pCOHP
« on: December 17, 2023, 22:13 »
Thanks, Jahanzaib. I hope so.

@QuantumATK, is there any alternative to COHP and pCOHP in QuantumATK?

11
General Questions and Answers / Re: DOS of five d orbitals
« on: December 17, 2023, 22:08 »
Thanks, Jahanzaib,

I mean to split the d orbitals into dxy, dx²-y², dyz, dxz, and dz², similar to the attached example. I am not solely interested in the spin-up and spin-down states of the d orbital of Fe. I am unsure how to use the script you suggested to split the d orbitals into the five 3d orbitals of Fe, considering both spin-up and spin-down states. Could you please provide more details on how to utilize the script for this purpose using the density of states (DOS) calculated in QuantumATK?

Kind Regards,
Habib

12
General Questions and Answers / Simulation of COHP and pCOHP
« on: December 15, 2023, 21:46 »
Hello,

Is it possible to simulate the Crystal Orbital Hamilton Population (COHP) and projected Crystal Orbital Hamilton Population (pCOHP) of a material using the QuantumATK?

Kind Regards
Habib

13
General Questions and Answers / DOS of five d orbitals
« on: December 15, 2023, 21:30 »
Hi there,

Can we simulate the density of states (DOS) of the five d orbitals (dxy, dx²-y², dyz, dxz, dz²) of transition metals such as Fe using QuantumATK? I can simulate the DOS of the s, p, d, and f orbitals of an atom but cannot do so separately for dxy, dx²-y², dyz, dxz, dz².

Kind Regards,
Habib

14
If someone can help?

15
General Questions and Answers / Gibbs free Energy Calculations
« on: October 8, 2023, 00:37 »
Hello,

I'm trying to figure out the Gibbs free energy for a reaction on the LaFeO3(100) surface. I read some forum posts and found out that the "IdealGasThermochemistry" object can help with this, but my QuantumATK version (Q-2019.12) doesn't have it. We're planning to upgrade, but it'll take some time.
To calculate Δ𝐺, we need to find Δ𝛦, Δ𝐸𝑍𝑃𝐸, and Δ𝑆. I already have Δ𝛦, which is -0.06 eV, and I can get 𝐸𝑍𝑃𝐸 and S for the isolated molecules from a database. But I'm not sure how to calculate the Zero-Point Energy (ZPE) corrections and the entropy change for the LaFeO3(100)@H system in QuantumATK Q-2019.12.
Is there an easy way to do this or a script that can help me extract ZPE and S from the optimized file of LaFeO3@H? Your guidance would be much appreciated!

Kind Regards
Habib

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