When a finite bias calculation is performed, an external field is introduced into the scattering region, and hence the potential that the electron feels when
traveling through the scattering region is different. Therefore the density of the central region will try to compensate for this potential, and hence it might create states that can cause either reflection or scattering of the propagating modes of the electrode.
It is very common that the transmission spectrum is altered strongly by the external field coming from the bias, and this is the reason why we need to perform calculations with NEGF.
However if your aim is too study a perfect system like the ideal CNT, then there is not natural place for the the voltage drop to occur, and therefore result might be come slightly artificial as you introduce as asymmetric potential in a perfect symmetric system. Therefore if your system is
an ideal, perfect system, I recommend using the linear response current function, as it will give you exactly want you want. The IV-curve of a infinite, perfect system.