For the model of Au-CdS naowire-Au, it can be definitely built and simulated by the ATK. The steps of model setup and simulation are basically same with those in the following paper:
Man-Fai Ng et al., Geometry Dependent I−V Characteristics of Silicon Nanowires, Nano Letters, 8, 3662 (2008),
http://pubs.acs.org/doi/abs/10.1021/nl801668pMaybe you I can tall me a bit a background for this calculation? I read some literaure from Datta to NEGF and Extend Huecke approach...Is that the way how ATK calculate electric properties like I-V-plots
Basically, they are same. The more detailed background can be found in "M. Brandbyge, J.-L. Mozos, P. Ordejón, J. Taylor, and K. Stokbro, Phys. Rev. B 65, 165401 (2002)" and "K. Stokbro, D. E. Petersen, S. Smidstrup, A. Blom, M. Ipsen and K. Kaasbjerg, Phys. Rev. B 82, 075420 (2010)". In ATK, the I-V curve can be calculated by the NEGF combined with the DFT or the Extend Huecke approach.