The original paper only used one k-point in the transverse direction, since the version used at that time did not include the k-point sampling in the transverse directions.
Since then we have learned that using a single k-point is not sufficient for a gold electrode, and the tutorial is done with 3x3 k-points which is OK. Thus, the result in the tutorial is more trustworthy than the paper, however, i find that the results are not radically different.
Besides this, the geometry, pseudo potentials and basis sets are not identical in the two calculations, however, this should be of minor importance.