One should be aware that phonon calculations are heavy lifting. On the other hand, ok 100 atoms - but what method? With the Tersoff potential I can do a phonon spectrum calculation of a (5,5) CNT with a Stone-Wales defect (200 atoms in total) in under 2 minutes on my laptop. The calculation uses about 120 MB of memory.
But a phonon calculation with 100 atoms with DFT, it might need 2 or 8 or 16 GB or more, it's impossible to tell without knowing the details of the system.