The transmission probability for a single incomming electron wave is always between 0 and 1. The transmission spectrum is not a spectrum of the probability of a single electron being transmitted through the two-probe It is the sum of probability of all the single modes being transmitted through the two-probe, so if there. at a given energy,
is three block waves called A,B,C and each of these has a transmission probability between 0 and 1, then the transmission spectrum is sum of the probability of A, B & C added together.
In more mathematical terms, you can see it as this:
For each block wave in the electrode, define a stochastic variable [tex]X_i[/tex] with a probability [tex]t_i[/tex] for being [tex]1[/tex] and [tex]1-t_i[/tex] for being [tex]0[/tex]. Define a new stochastic variable as the sum of these stochastic variable [tex] X = \sum_i X_i[/tex]. The value in the transmission spectrum is the expectation value of this stochastic variable [tex]<X>[/tex], which equals [tex]<X> = \sum_i <X_i> = \sum_i t_i[/tex], and therefore even if [tex]t_i[/tex] always is between 0 and 1, then the sum is not.
I hope that I am making it more clear