I know the feeling! I have learn the hard way how much tougher it is to get NEGF to converge compared to usual DFT :|
However there is hope. I have done IV calculations on huge graphene sheets with 6000 atoms - so it is possible
And it was even with a gate voltage and I tried to model that these graphene sheets could be used a field-effect transistor,
and with good results.
The best way to get started on cracking these problems is for me, that starting out by a trial system, that involves the same chemical elements,
and geometries types as the target system. Then it is fast to try a few things and learn what makes this calculation converge fast and rock-solid.
Almost always can this insight be transfered to the target system right away.
I know there exist a little advanced tutorial on getting twoprobes to converge better and safer, but I dont have it.
Perhaps you can get it from QuantumWise if you write to them.....