Author Topic: import multi frame xyz file  (Read 2203 times)

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Offline mmg016

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import multi frame xyz file
« on: January 11, 2018, 09:53 »
Dear all,
 
I would like to import an .xyz file with multiple frames in it. I am attaching a sample xyz file with multiple frames. Could someone help me to import this in the builder of virtual nanolab. Thank you.

Regards.

Offline Ulrik G. Vej-Hansen

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Re: import multi frame xyz file
« Reply #1 on: January 11, 2018, 13:42 »
Unfortunately, it cannot be imported directly into the Builder. I suggest that you use the following approach:

* Divide each image into separate files, possibly with the use of a shell script.
* If you want the images separately, you can then import each file on its own.
* If you would like a trajectory instead, you need to first convert the configurations in a script as explained in the documentation here: https://docs.quantumwise.com/tutorials/vnl_io_import/vnl_io_import.html
* Afterwards, or in the same script of course, you can collect the different configurations into a trajectory by using this function: trajectory._addConfiguration(bulk). Note that the underscore shows that we do not ensure backwards compatibility in new releases for this function.

I realize this method is a little more cumbersome, but it also strength of the Python interface, allowing you to do things that are not implemented in VNL.