Author Topic: Geometry optimization in ATK-SE  (Read 2905 times)

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Offline Gundu

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Geometry optimization in ATK-SE
« on: April 5, 2012, 09:00 »
 Dear sir,


         Today morning i run the program with Slater-Koster model by choosing DFTB and Hotbit separatly even though  i face same problem.If you don't mine sir,please sir once you run program for geometry optimization(Z-2-BNNR-clB-clN or Z-2-BNNR-clF-clF)  then you came to know what problem is there. Program i run in the morning that is terminated abnormally with worning message which is shown below

 +------------------------------------------------------------------------------+
| NanoLanguageScript execution started                                         |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
|                                                                              |
| Atomistix ToolKit 11.8.2 [Build 09819e5]                                     |
|                                                                              |
+------------------------------------------------------------------------------+
+----------------------------------------------------------+
| Bulk Bravais lattice                                     |
+----------------------------------------------------------+
Type:
UnitCell

Lattice constants:

Primitive vectors:
u_1 =  2.000000e+01  0.000000e+00  0.000000e+00 Ang
u_2 =  0.000000e+00  2.504372e+01  0.000000e+00 Ang
u_3 =  0.000000e+00  0.000000e+00  2.461002e+00 Ang

+----------------------------------------------------------+
| Bulk: XYZ representation                                 |
+----------------------------------------------------------+
6
Bulk
  B   1.000000e+01  1.394272e+01  0.000000e+00
  N   1.000000e+01  1.110100e+01  0.000000e+00
  B   1.000000e+01  1.181143e+01  1.230501e+00
  N   1.000000e+01  1.323229e+01  1.230501e+00
 Cl   1.000000e+01  1.504372e+01  0.000000e+00
 Cl   1.000000e+01  1.000000e+01  0.000000e+00
Traceback (most recent call last):
  File "c:\users\hp\appdata\local\temp\2993216526250347.py", line 60, in <module>
    bulk_configuration.update()
  File ".\zipdir\NL\CommonConcepts\Configurations\AtomicConfiguration.py", line 471, in update
  File ".\zipdir\NL\Calculators\BulkCalculatorInterface.py", line 141, in _update
  File ".\zipdir\NL\Calculators\BulkCalculatorInterface.py", line 129, in _upgrade
  File ".\zipdir\NL\Calculators\SlaterKosterCalculator\SlaterKosterCalculator.py", line 230, in _customUpgrade
  File ".\zipdir\NL\Calculators\SlaterKosterCalculator\Builders\AbstractSlaterKosterBuilder.py", line 24, in loadAndCheckBasis
  File ".\zipdir\NL\Calculators\SlaterKosterCalculator\Parameters\SlaterKosterDirectory.py", line 70, in table
  File ".\zipdir\NL\Calculators\SlaterKosterCalculator\Parameters\SlaterKosterDirectory.py", line 147, in __load
  File ".\zipdir\NL\Calculators\SlaterKosterCalculator\Parameters\SlaterKosterDirectory.py", line 302, in _onsiteFilenamesFromElementsList
NL.ComputerScienceUtilities.Exceptions.NLValueError: The Slater-Koster parameters file B.elm was not found.
The full file path should be: C:\Program Files (x86)\Quantumwise\atk-11.8.2\atkpython\bin\..\..\atkpython\share\tightbinding\B.elm

+------------------------------------------------------------------------------+
| NanoLanguageScript execution finished                                        |
+------------------------------------------------------------------------------+
thanking you sir

Regards
khatri

Offline Anders Blom

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Re: Geometry optimization in ATK-SE
« Reply #1 on: April 5, 2012, 09:10 »
Hotbit doesn't have parameters for Boron. DFTB does, if you have obtained parameters from http://dftb.org then you can use the "matsci" library according to instructions similar to those in http://quantumwise.com/documents/tutorials/latest/DFTB/index.html/.
« Last Edit: April 5, 2012, 09:13 by Anders Blom »