Author Topic: A problem occurred when calculating  (Read 2080 times)

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Offline huangshenjie

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A problem occurred when calculating
« on: March 5, 2013, 09:22 »
Dear all, I made a py file and calculated through ATK 10.8. However, an error appeared and the log file shows as follow:
"Density Matrix Calculation : ==============rank 0 in job 9  localhost.localdomain_33142   caused collective abort of all ranks
  exit status of rank 0: return code 137"

I don't what is wrong with my calculation~~

Offline Anders Blom

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Re: A problem occurred when calculating
« Reply #1 on: March 5, 2013, 10:15 »
It may be some local problem on the cluster, or possibly you ran out of memory. Try running again, if the problem appears in the same place make sure you are running only one MPI process / node. You can estimate the amount of memory a calculation need (roughly) as described in http://quantumwise.com/documents/tutorials/ATK-12.8/MemoryUsage/

Offline huangshenjie

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Re: A problem occurred when calculating
« Reply #2 on: March 5, 2013, 11:23 »
It may be some local problem on the cluster, or possibly you ran out of memory. Try running again, if the problem appears in the same place make sure you are running only one MPI process / node. You can estimate the amount of memory a calculation need (roughly) as described in http://quantumwise.com/documents/tutorials/ATK-12.8/MemoryUsage/

Thank you sir. By the way, how to make sure whether I am running only one MPI process?? I'm a beginner at linux~~

And after I reduced the k pionts from 9*9 to 3*3, this problem didn't appear any more. Is that means the problem is running out of memory?
« Last Edit: March 5, 2013, 11:26 by huangshenjie »

Offline Anders Blom

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Re: A problem occurred when calculating
« Reply #3 on: March 5, 2013, 13:47 »
Probably.

The control of how many MPI processes you are using and where they go are essential for performance. It is controlled by a combination of the "mpiexec -n" options and the queue resource allocation (if such is present). You should study those options carefully to make sure you know what they mean. Then also have a look at http://quantumwise.com/documents/tutorials/latest/ParallelGuide/.