# sc 26 : q = 193.26029 e Etot = -3687.65468 Ry dRho = 2.6318E-04 dEtot = 7.0024E-06 Ry
By examining the log file of Li-H2-Li system during the self-consistent calculation, one may find that the charge printed here is computed by the Mulliken population analysis for the scattering region (i.e., center region). see below for the last iteration step:
# sc 14 : q = 7.95068 e Etot = -12.91021 Ry dRho = 7.6522E-06 dEtot = -9.6834E-07 Ry
#-------------------------------------------------------------------------------
# Mulliken Population for sc 14
#-------------------------------------------------------------------------------
4 Li q = 0.98680 [ s: 0.987 ]
5 Li q = 1.02999 [ s: 1.030 ]
6 Li q = 0.94415 [ s: 0.944 ]
7 H q = 1.01437 [ s: 0.535, s: 0.454, py: 0.000, pz: 0.025, px: 0.000 ]
8 H q = 1.01424 [ s: 0.535, s: 0.454, py: 0.000, pz: 0.025, px: 0.000 ]
9 Li q = 0.94416 [ s: 0.944 ]
10 Li q = 1.02998 [ s: 1.030 ]
11 Li q = 0.98699 [ s: 0.987 ]
#-------------------------------------------------------------------------------
# Total Charge = 7.95068
# ----------------------------------------------------------------
# Total Energy = -26398.6064 eV
# Potential Energy = -26398.6064 eV
# Ion Kinetic Energy = 0.0000 eV
# ----------------------------------------------------------------
# NumOrb: Energy of system
# ----------------------------------------------------------------
# Charge = 195.1892
# Band Structure Energy = -726.1524 eV
# ----------------------------------------------------------------
The final iteration giving charge is not equal to the charge given in the properties output. Any explanation would be helpful.
I guess that the charge printed below "# NumOrb: Energy of system" may be estimated by the density matrix (i.e.[tex]\rho_{c,c}[/tex]) of scattering region. In addition, the "Band Structure Energy" printed below "# NumOrb: Energy of system" may be computed by the Eq.(22) in PRB 63, 245407(2001). i.e.,
[tex]E_{BS}=Tr_c[\rho H]=\rho_{c,l}h_{l,c}+\rho_{c,c}h_{c,c}+\rho_{c,r}h_{r,c}[/tex]