Author Topic: Siesta coordinates to import into VNL  (Read 2799 times)

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Offline Heinz

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Siesta coordinates to import into VNL
« on: May 18, 2014, 20:52 »
Hello,

I'm trying VNL and ATK. I got the following atomic coordinates from one of my friends (related to a functionalized graphene). These are cartesian coordinates from Siesta program. I tried to import into VNL but no success. Could you please help me?

The coordinates are:

0.01483081 -0.00742221 0.14682416 1 C 1
-0.85349256 0.49769778 0.00387142 1 C 2
-0.85405403 -0.50039182 -0.04330053 1 C 3
-0.00024646 1.00829486 0.04551959 1 C 4
0.56126433 0.00480596 -0.14561040 1 C 5
-0.29394182 0.50774182 0.03681364 1 C 6
-0.29496101 -0.51140389 -0.00678658 1 C 7
0.57574494 -1.01019615 -0.04346567 1 C 8
0.42304635 0.02267319 -0.70870169 2 O 9
0.70611448 -0.18549126 -0.90057901 3 H 10
0.15239408 -0.02837404 0.71003107 2 O 11
-0.12867698 0.18179787 0.90247868 3 H 12

Offline Anders Blom

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Re: Siesta coordinates to import into VNL
« Reply #1 on: May 19, 2014, 00:13 »
Shift the columns around so the element is first, and remove the integer numbers. Then add two lines at the top to turn into into XYZ format, then save as structure.xyz and import in VNL.