Recently i ran two device with wo - dimensional materials ,it has 340 atoms .They both return the error message.
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| indices_0 = [192, 193, 194, 195, 196, 197, 198, 199, 200, 201, |
| 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, |
| 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, |
| 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, |
| 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, |
| 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, |
| 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, |
| 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, |
| 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, |
| 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, |
| 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, |
| 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, |
| 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, |
| 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, |
| 332, 333, 334, 335] |
| indices_1 = [ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, |
| 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, |
| 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, |
| 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, |
| 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, |
| 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, |
| 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, |
| 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, |
| 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, |
| 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, |
| 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, |
| 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, |
| 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, |
| 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, |
| 140, 141, 142, 143] |
| constraints = [RigidBody(indices_0), RigidBody(indices_1)] |
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| bulk_configuration = OptimizeGeometry( |
| bulk_configuration, |
| max_forces=0.05*eV/Ang, |
| max_steps=500, |
| max_step_length=0.2*Ang, |
| constraints=constraints, |
| trajectory_filename='trajectory.nc', |
| disable_stress=True, |
| optimizer_method=LBFGS(), |
| ) |
| nlsave('Device-heterojunctions2.nc', bulk_configuration) |
| nlprint(bulk_configuration) |
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