I can see that you have used the Wulff construction method for defining the nanowire geometry. Although the wire will be oriented in the specified direction, the edge geometry is a bit different compared to that used in the article.
I made the wire in a "simpler" way: I cleaved Si (110) in the Builder, then repeated it 9x6 times in A/B, then increased the cell to add vacuum, centered the coordinates, and passivated it.
The resulting band structure is shown in the attached picture. I think it's a perfect match to the article