Thanks Dr. Anders,
Couple of more questions,
1. What is periodic boundary conditions? As far as I know it means connecting two distinct end with each other forming a ring like structure? i.e. setting the first(1,N) element in Hamiltonian equal to the last(N,1).
2. The manual says for 'DeviceHuckelCalculator' use poisson solver with MultigridSolver([PeriodicBoundaryCondition,PeriodicBoundaryCondition,DirichletBoundaryCondition]). Now shouldn't it be MultigridSolver([Neumann,Neumann,DirichletBoundaryCondition]). Since the central region is not infinite in a,b direction instead the electric field there is zero.
Thanks,
-Arya