Dear Dr. Bloom,
I would also be interested in such a possibility, to project onto the eigenstates of an isolated molecule calculated with MPSH analysis. As you mentioned, it is possible to project the DOS onto the molecule atoms, but this way it is the projection onto atomic orbitals, right? Since all the relevant information are accessible (DOS of the full system as well as the MOs of the isolated molecule) it should be possible to project onto MOs. Are there any news on this or maybe a hint for an external script?
Best,
Markus