Dear everyone:
I have now encountered a result which I can not understand well. Please help me to explain it.
I have put the result in the attachment. The solid line is the transmission spectrum of the molecular junction (Au/molecule/Au system), the dash line is the projected density of state to the bare molecule and the down-triangle is the MPSH for bare molecule+6Au (which are the nearest neighboring Au atoms to acount for the interaction between molecule and the surface electrodes.)
As seen, there are two sharp PDOS peaks locating at 0.3 and 1.0 eV and two broad PDOS peaks at 0.2 and 1.4 eV. The MPSH for the two sharp PDOS peaks are very localized and the two broad PDOS peaks are delocalized which can be understood. But the transmission at 0.3 and 1.0 eV are 0.74 and 0.73 respectively, which are noticeable. To my knowledge, a localized PDOS should has a very small transmission. Do I have a wrong understand? Or is there something else I misunderstand? And In what case, the localized PDOS can have a noticeable transmission?
Please help. Any explanation is appreciated.
Best regards.
Yours,
Guangping