In first case...one of the transistor is providing comparatively much higher resistance...thus restricting the current to flow through the path which is actually made of the series connection of one high and one low resistance transistor......
For the other case, when a single device is conceptually divided into to separate regions, then the entire resistance provided by the device can be computed taking into the effects of the adjacent atomic orbitals..... Now even if there is one part which is perfect (Would have provided a fair amount of BG), still the neighboring sites which are having LER will have a strong impact on determining the overall band structure of the device....thus ultimately the BG would be shifted to any lower value..... So in the end the effective resistance of the device will get very much altered only.... Thereby, I think, this case is quite different from the first one....