Author Topic: wrapping around CNT  (Read 6665 times)

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Offline tara

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wrapping around CNT
« on: August 13, 2014, 14:51 »
Dear sir

 How to wrap few layers of  metal atoms (example titanium , nickle) all around cnt ? I am using ATK version 13.8.

Offline Umberto Martinez

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Re: wrapping around CNT
« Reply #1 on: August 15, 2014, 11:46 »
In many ways, but you can start by creating a metal nanowire and remove the atoms in the center to create some kind of tube.
You can use the different selection tools in the builder.

Then you can merge the two structures with the Bulk Tools>Merge cells or by simply drag and drop one into the other.

finally, move the carbon nanotube inside the metal tube.

If you follow the Builder tutorials online and become familiar with the Builder tools you should be able to perform all these operations quite easily.
http://quantumwise.com/publications/tutorials/builder

you can also wrap the metal layers to a tube similar to what is reported here http://quantumwise.com/publications/tutorials/builder/177-mos2-nanotubes
but I am not sure how "realistic" the structure will be.
Well, this is up to you to judge :)

Offline tara

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Re: wrapping around CNT
« Reply #2 on: August 16, 2014, 13:04 »
Dear sir

How to convert hexagonal unit cell to orthorombic unit cell in ATK 13.8 version.

I referred to  http://quantumwise.com/publications/tutorials/builder/177-mos2-nanotubes  but it is for older version and doesnt work for 13.8 version

Can you explain , in bulk tool-->supercell, what  values of A,B, C and A',B',C' should be given so as convert titanium hexagonal unit cell to orthorombic in order to tubewrap titanium???Also if after converting to orthorombic is there a need to swap axis??


Offline Umberto Martinez

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Re: wrapping around CNT
« Reply #3 on: August 18, 2014, 23:01 »
the tutorial works just fine with 13.8 version and even 2014.

Simply follow the instruction there: "The cell is hexagonal cell, but to make the tube it is necessary to have an orthorhombic supercell to work with. Therefore, open "Bulk Tools>Supercell" and use the settings as in the picture."
which are:
1 1 0
-1 1 0
0 0 1

which error did you get exactly?

Offline tara

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Re: wrapping around CNT
« Reply #4 on: September 5, 2014, 20:30 »
As given in this tutorial    http://quantumwise.com/publications/tutorials/item/100-mos2-nanotubes

 i followed all steps which included coverting hexagonal to orthorhombic by the above mentioned combination of super cell but in the end Mos2 did not wrap around in a proper tube rather it came out a wierd structure.
i have attached a screenshot of what i got.

Kindly help me form the tube


Offline Umberto Martinez

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Re: wrapping around CNT
« Reply #5 on: September 8, 2014, 16:59 »
It is indeed a weird structure!

Steps 6 to 10 are very delicate. Can you save and send the structure (save as python file) you obtain from these steps just before the wrapping?

Offline ams_nanolab

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Re: wrapping around CNT
« Reply #6 on: September 9, 2014, 19:47 »
Update your graphics card driver. This happens if the graphics driver is not installed :D

Offline tara

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Re: wrapping around CNT
« Reply #7 on: September 14, 2014, 06:38 »
i have atttached the python file just before wrapping Mos2.
"Bulk Tools>Supercell" and use the settings as in the picture."
which are:
1 1 0
-1 1 0
0 0 1

I have repeated 20 times in "B" direction and then did step 8,9,10.I am not able to tube wrap with this properly.

Offline Anders Blom

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Re: wrapping around CNT
« Reply #8 on: September 14, 2014, 14:23 »
Do you have the latest version of the plugin? If took your attached script and set the rotation angle to 360 in the tube wrapper, works perfectly.

(I really don't think this has anything to do with the graphics card.)

Offline shivgy

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Re: wrapping around CNT
« Reply #9 on: September 22, 2014, 10:26 »
This is because of graphics card only. I tried this and it is working fine. i am using 13.8.2

Offline tara

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Re: wrapping around CNT
« Reply #10 on: September 23, 2014, 12:02 »
i updated the my plugin version and now its working fine :)

Offline tara

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Re: wrapping around CNT
« Reply #11 on: October 9, 2014, 20:41 »
1) I tried to make a thicker and broader ring of titanium.The outer Ti atoms dont seem to have bonded.
What could be possible reason for it??
i have attached the python script

2)When i tried to insert the ring after applying dielectric all around oxide over the cnt, on merging ,the oxide disappears.Is it that after dielectric is put ,2 structures cant be merged with the dielectric??