The simple version is, the two k-point samplings do not have to be the same, and in most cases should not be. To figure out the suitable k-point sampling for the self-consistent loop, you should check the convergence of the total energy (for the electrodes, in case of a device). For the transmission, you need to compute the transmission spectrum for 3x3, 9x9, 27x27 or whatever increment you prefer, and check when the current (or transmission spectrum) does not change anymore. Note that at finite bias you may need more k-points than at zero bias.