So, you are in the situation where you would like to calculate and compare the band gaps of a range of different materials. However, you only have experimental band gaps for a few of them. If using MGGA, you can choose between using self-consistent c-values or fitted c-values.
If you were considering fully periodic bulk systems, I would recommend using self-consistently determined c-values for all materials. That's a simple and clean approach. However, you are considering 2D materials with large vacuums, for which the c-parameter probably diverges if you try the self-consistent option. Therefore, I would use for all the materials a c-value that was fitted to match the experimental band gap of MoS2. This would give you a good foundation for seeing which material has larger or smaller gap, and the general trend of the gaps under applied strains.
However, MGGA might just not be the best way to get correct band gaps for TMDs. Probably the only real option for a scientifically correct approach is to use HSE06 or similar. FHI-aims could do that.