Author Topic: Error when starting the QATK scriptor from builder  (Read 3771 times)

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Offline cfdee001

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Error when starting the QATK scriptor from builder
« on: October 29, 2020, 11:21 »
Dear

I have encountered the below error message when I wanted to start a scriptor.
I imported a *.mol file from ChemSpider (http://www.chemspider.com/) website.
The structure was displayed properly in the builder.
After that I tried to proceed to scriptor. (See attachment)
It showed me this error message.


Traceback (most recent call last):
  File "zipdir\NL\GUI\Menus\SendToMenu.py", line 233, in showWindow
  File "zipdir\NL\GUI\MainWindow\MainWindow.py", line 1088, in scripter
  File "zipdir\NL\GUI\Tools\ScriptGenerator\ScriptGenerator.py", line 383, in __init__
  File "zipdir\NL\GUI\Tools\ScriptGenerator\ScriptGenerator.py", line 94, in __init__
  File "zipdir\NL\GUI\Tools\ScriptGenerator\Templates\TemplateManager.py", line 84, in __init__
  File "zipdir\NL\GUI\Tools\ScriptGenerator\Templates\TemplateManager.py", line 223, in loadTemplates
  File "zipdir\NL\GUI\Tools\ScriptGenerator\Templates\TemplateManager.py", line 254, in loadTemplatesFromCache
  File "zipdir\NL\IO\NLSaveUtilities.py", line 249, in nlinspect
  File "zipdir\NL\IO\HDF5.py", line 976, in inspectHDF5
  File "zipdir\NL\IO\HDF5.py", line 235, in contents
  File "zipdir\NL\IO\HDF5.py", line 235, in <listcomp>
  File "h5py\_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
  File "h5py\_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
  File "build\lib\site-packages\h5py-2.7.1-py3.6-win-amd64.egg\h5py\_hl\group.py", line 167, in __getitem__
  File "h5py\_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
  File "h5py\_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
  File "h5py\h5o.pyx", line 190, in h5py.h5o.open
ValueError: No name (no name)


I had done this a few times without any problem previously.
Also I was sure this is not due to the file problem. because I tried to run the previously successfully runned file, it also had the same error message.

Hope someone can help me to solve this problem

TQVM
« Last Edit: October 29, 2020, 12:11 by cfdee001 »

Offline mlee

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Re: Error when starting the QATK scriptor from builder
« Reply #1 on: October 29, 2020, 16:00 »
In the R-2020.09 version, it works without any problem.
Can you try to save as .py or .hdf5 and send it to scripter?


Offline cfdee001

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Re: Error when starting the QATK scriptor from builder
« Reply #2 on: October 29, 2020, 16:29 »
Dear Mlee,

Thank you very much for your reply.
I have tried it before, also cannot.
Even all my previous files that working properly last time also facing same problem already.


Offline mlee

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Re: Error when starting the QATK scriptor from builder
« Reply #3 on: October 30, 2020, 12:22 »
Can you delete the Builder_stash.hdf5 in the project directory(you will delete all previous builder configuration, if you don't want it, you can create a new project and open the builder.) and try to import it again? Then let us know about it.

Offline cfdee001

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Re: Error when starting the QATK scriptor from builder
« Reply #4 on: October 31, 2020, 09:41 »
Dear MLee,

I have deleted all the "builder_stash.hdf5", still have the same problem.
Also, do I need to delete the "classic_mode_builder_stash.hdf5" as well?

Thank you

Offline mlee

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Re: Error when starting the QATK scriptor from builder
« Reply #5 on: November 3, 2020, 08:19 »
It will be safe to create new project using the new directory. Then you can import and send to it. Can you try it?

Offline cfdee001

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Re: Error when starting the QATK scriptor from builder
« Reply #6 on: November 4, 2020, 02:18 »
Dear Mlee,

I have solved the error by reseting the

C:\Users\[username]\.vnl
C:\Users\[username]\.quantumwise

Thanks

Offline mlee

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Re: Error when starting the QATK scriptor from builder
« Reply #7 on: November 4, 2020, 12:44 »
Good to hear about it.

Offline bharadway

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Re: Error when starting the QATK scriptor from builder
« Reply #8 on: May 6, 2021, 19:32 »
Dear Mlee,

I have solved the error by reseting the

C:\Users\[username]\.vnl
C:\Users\[username]\.quantumwise

Thanks

What do you mean by resetting?

Thanks.

Offline mlee

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Re: Error when starting the QATK scriptor from builder
« Reply #9 on: May 7, 2021, 12:48 »
Dear bharadway,

If you meet an error to open the builder continuously,  I recommend to delete the Builder_stash.hdf5 in the project directory. You will delete all previous builder configuration, if you don't want it, you can create a new project and open the builder.

But in the below case, it seems to crash related to the opening the Nanolab GUI. In that case, it will be solved as cleaning the *.hdf5 in  C:\Users\[username]\.vnl

« Last Edit: May 7, 2021, 12:50 by mlee »

Offline Alireza

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Re: Error when starting the QATK scriptor from builder
« Reply #10 on: May 7, 2021, 14:01 »
Dear Mlee,

I have issue in starting a job both locally or on cluster and always facing with the attached error.

Offline Alireza

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Re: Error when starting the QATK scriptor from builder
« Reply #11 on: May 7, 2021, 14:23 »
New error after cleaning /home/username/.vnl/job_manager_2020.09/